Question: fasta generation for functional elements
0
gravatar for ajmaninisha
3.1 years ago by
ajmaninisha30
Canada
ajmaninisha30 wrote:

Hi,

 

I have got several suggestion how to extract fasta sequence from assembled cufflinks like to use gff read program or extract genomic DNA .Both of these programs help in generating fasta sequence with respect to the reference annoation file but i want to extract fasta sequence from mapped reads so that i have a better picture to find the functional elements present in my samples.This will also help to identify novel genes and transcripts.

 

is there a better way to extract fasta format .

 

Thanks

 

NISHA

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