Question: Host a local Tool Shed in v15.05 of Galaxy
0
gravatar for irushavm
3.5 years ago by
irushavm0
Canada
irushavm0 wrote:

Hi!

I am currently trying to test some custom tools that I've written for galaxy. I've used the Galaxy Tool Factory to run the scripts that I've made but I want to upload them to a local Tool Shed to test out the script as a standalone tool rather than a task run through the Galaxy Tool Factory. I have followed many of the guides that are on the main website with no success. I cannot find the files that they are referring to. The new release of Galaxy seems to missing the files they are refering to in this page: https://wiki.galaxyproject.org/HostingALocalToolShed 

Any help is greatly appreciated!

Thanks

toolshed galaxy • 998 views
ADD COMMENTlink modified 3.4 years ago by jmchilton1.1k • written 3.5 years ago by irushavm0
1
gravatar for Martin Čech
3.5 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

I would recommend trying your tools out on the Test Tool Shed at https://testtoolshed.g2.bx.psu.edu/
It will save you a lot of setup trouble.

The documentation you are referring to is outdated and the priority to make it up to date is low. Sorry for the inconvenience.

ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by Martin Čech ♦♦ 4.9k

Thanks for the quick answer! I will test my tools in the Test Toolshed then.

ADD REPLYlink written 3.5 years ago by irushavm0
1
gravatar for jmchilton
3.4 years ago by
jmchilton1.1k
United States
jmchilton1.1k wrote:

I updated the config file locations reference in https://wiki.galaxyproject.org/HostingALocalToolShed as well as a few other things that have changed over the last year. Though I do agree with Martin that it is best to use the test Tool Shed unless you have a compelling reason to use a local one.

ADD COMMENTlink written 3.4 years ago by jmchilton1.1k
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