Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: TimeStamp of files in Galaxy (UTC)
0
gravatar for danielfortin86
3.5 years ago by
danielfortin86 • 110
United States
danielfortin86 • 110 wrote:

Is it possible to change how timestamps are dealt with? It seems that all of the timestamps in the logs etc... are UTC. I've tried changing the "pretty_datetime_format" field in galaxy.ini but this hasn't seemed to work. When I issue the command "date" at the command-line I get the correct local time. Can anybody give me a clue as to how to set galaxy so that all times are also local?

Thanks
timestamp pretty_datetime_format galaxy • 926 views
ADD COMMENT • link •
modified 3.4 years ago by jmchilton ♦ 1.1k • written 3.5 years ago by danielfortin86 • 110
0
gravatar for jmchilton
3.4 years ago by
jmchilton ♦ 1.1k
United States
jmchilton ♦ 1.1k wrote:

My understanding is Galaxy's logging is customizable by placing a logger section in the config/galaxy.ini file. More details on the logger section and subsequent sections are documented in Python's standard library documentation here - https://docs.python.org/2/library/logging.config.html#logging-config-fileformat. It looks like the time field Galaxy uses by default is called asctime - which in turn is documented here https://docs.python.org/2/library/logging.html. In turn - it looks like this would respect adding another field called datefmt - http://stackoverflow.com/a/6127057.

Hope this helps.

 
ADD COMMENT • link written 3.4 years ago by jmchilton ♦ 1.1k

Thanks for the response. Unfortunately, my knowledge of python and galaxy internals isn't too solid. Can you be a little more explicit in what you're suggesting? I'm assuming this requires adding something like the following to the galaxy.ini file?

[formatter_simpleFormatter]
format=%(asctime)s - %(name)s - %(levelname)s - %(message)s
datefmt=%Y-%m-%d %H:%M:%S

I tried doing this, but without any success. Can you provide any additional insight?

Thanks!

ADD REPLY • link written 3.4 years ago by danielfortin86 • 110
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 180 users visited in the last hour