Question: Rgenetics Tool
0
fubar ♦ 1.1k wrote:
Arun, if you have a plink format genotype file (pbed is best -
compressed) in your history, it should appear among the input files
for the eigenstrat tool - it seems to be ok on Main right now.
They can be uploaded using the get data upload tool - you have to
manually set the datatype to pbed so the three file parts can be
uploaded together.
The eigensoft tool uses a subset since WGA SNPs contain a lot of
redundant information - an LD independent set is more efficient and
loses little information.
If you select a pbed it should be automatically converted - and run
more quickly the second time