Question: Rgenetics Tool
gravatar for fubar
8.4 years ago by
fubar1.1k wrote:
Arun, if you have a plink format genotype file (pbed is best - compressed) in your history, it should appear among the input files for the eigenstrat tool - it seems to be ok on Main right now. They can be uploaded using the get data upload tool - you have to manually set the datatype to pbed so the three file parts can be uploaded together. The eigensoft tool uses a subset since WGA SNPs contain a lot of redundant information - an LD independent set is more efficient and loses little information. If you select a pbed it should be automatically converted - and run more quickly the second time
snp • 732 views
ADD COMMENTlink written 8.4 years ago by fubar1.1k
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