Question: (Closed) I am new to cummeRbund with few questions regarding setting up directory.
0
gravatar for mfahim
3.1 years ago by
mfahim0
Korea, Republic Of
mfahim0 wrote:

I am running cummeRbund using Rstudio. I have copied the cuff_diff output to desktop and is in Folder diff_out.

I run a command.

>Library(cummeRbund)

>cuff<-readCufflinks('~desktop/diff_out')

Here is the error

Creating database ~desktop/diff_out/cuffdata.db

Error in .local(drv,...) : could not connect to database:

unable to open database file

 

WHAT is happening and how to get out of this situation.

 

Would greatly appreciate step wise start to my analysis.

Cheers

 

Fahim

cummerbund cufflinks cuffdiff • 1.1k views
ADD COMMENTlink modified 3.1 years ago by Jennifer Hillman Jackson25k • written 3.1 years ago by mfahim0

Hello mfahim!

We believe that this post is does not fit the main topic of this site.

This forum is dedicated to Galaxy usage. The developers of this application are the best support choice.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 3.1 years ago by Jennifer Hillman Jackson25k
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