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• de novo assembly in Galaxy using multiple transcriptomes
  I want to do de novo assembly of about 13 fferent transcriptome libraries however in Trinity I fo...
• where is the de novo assembler?
  hi, first of all thanks for your hard work! I'm trying to do a de novo assembly of a mouse transc...
• Trinity "Exceeded step memory limit" error?
  Hi, I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinit...
• De Novo Assembly Plant Transcriptome
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• De novo assembly of a genome sequence
  I am new to the Galaxy. Can you do a de novo sequence asembly using the Galaxy? Thanks.
• Velvet in usegalaxy.org
  How can i use velvet assembler in usegalaxy.org for de novo whole genome assembly. ?
• Quality Assessment of RNA de novo assemble (trinity) without reference genome
  Hello, Are there any tools within the galaxy tool shed that would give me a quality assessment o...
• How to make De novo genome assembly?
  Hi, I have an account "on Main".I can't find Velvet for De  Novo genome assembly. However i have...
• de novo assembly
  Hi folks I would like to use de novo assembly and quantification for mink RNA-Seq data. I am won...
• De Novo Rna-Seq Workflow
  Hi guys, I am looking for a de novo RNA-seq workflow that uses trinity. Any idea if there is one...
• Suggestions For De Novo Assembly Plant Transcriptome Without Reference
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• Signing off Galaxy resources
  I am using Galaxy Main (usegalaxy.org), and I will soon be using gigagalaxy. Both applications in...
• De novo transcriptome analysis pipeline
  Hello, I am currently running Trinity to do de novo transcriptome assembly of a breeding gland ...
• De Novo Assembly
  Hello, I would like to know if Galaxy can do de novo assembly without a reference genome. Thanks....
• Trinity Assembly - data files too big
  I'd like to run a Trinity de novo assembly in Galaxy. My left and right concatenated files are ~2...
• Trinity - De novo transcriptome assembly
  Jobs submitted to Trinity for de novo assembly at Galaxy main hang in "This job is waiting to run...
• Trinity jobs on hold for four days
  Hi everybody, Is there anything wrong with the Trinity De Novo RNA-Seq assembly? I submitted my j...
• Paired end illumina RNAseq reads - running trinity with paired trimmed files and adding unpaired as single read?
  We have paired end Illumina HiSeq 4000 reads that we are working to remove adaptors and trim base...
• de Novo assembly
      Hi, I am new to galaxy and its tool shed. I have been looking for genome assemblers and ca...
• De-novo assembly of a bacterial genome
  I am trying to assemble a bacterial genome of length 8Mb in **orione.crs4.it** . I could successf...
• Trinity results mismatch during alignment
  Hello Jen I thank you for your help. I think I have understood why there is a mismatch. I run de...
• Queue times to run Trinity?
  Hello, I'm rather new to Galaxy. I'm trying to run de novo assembly for RNAseq data using Trinit...
• Trinity job not running
  Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired...