Question: GATK Haplotype Caller
0
gravatar for ecekartal89
2.8 years ago by
Turkey
ecekartal890 wrote:

Dear Sir,

We want to use Galaxy for our exome data analysis however Galaxy does not include GATK Haplotype Caller. Could you add the GATK Haplotype Caller?

Thank you for your kindly assistance,

Best regards

galaxy gatk • 929 views
ADD COMMENTlink modified 2.7 years ago by Jennifer Hillman Jackson23k • written 2.8 years ago by ecekartal890
0
gravatar for Jennifer Hillman Jackson
2.7 years ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

The core development team will not be updating the GATK tools going forward - but the community might. Trello would be a good place to put the request. Here is how: http://wiki.galaxyproject.org/Issues

Best, Jen, Galaxy team

 

ADD COMMENTlink written 2.7 years ago by Jennifer Hillman Jackson23k

Can I ask why, out of curiosity? Is there a different SNP calling tool considered the standard in Galaxy (e.g., samtools)?

ADD REPLYlink written 2.2 years ago by vladimir.gritsenko90
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