I've been attempting to create and integrate a script into Galaxy using instructions in various tutorials and the official wiki but have yet to successfully do so.
I've placed the python script and an xml wrapper in /pathtogalaxy/tools/myTools/ and updated the config/tool_conf.xml file with the following:
<section id="my_tools" name="My Tools">
<tool file="my_tools/xy_plot.xml" />
<tool file="my_tools/merge_htseq.xml" />
However the tools are not showing in the bar when I run the galaxy server and the automatically generated integrated_tool_panel.xml for this section does not appear to be showing the tools.
<section id="my_tools" name="My Tools" version="">
The galaxy.ini also seems to be correctly configured as far as I can tell:
tool_path = /mnt/work/galaxy/galaxy/tools
tool_config_file = config/tool_conf.xml,config/shed_tool_conf.xml
Does anybody have any advice on what I'm doing incorrectly?
Thanks in advance,