Question: CummeRbund error in galaxy local
gravatar for raj_262920
3.4 years ago by
raj_26292020 wrote:


is there a protocol or tutorial that shows how to use CummerRbound after cuffdiff ? I downloaded all the 14 cuffdiff output files from the analysis in usegalaxy account and uploaded them to my local galaxy and tried to use CummeRBound to these data which shows an error ? It says no CummeRbund was detected even though i installed it through tool shed ?


rna-seq galaxy • 800 views
ADD COMMENTlink modified 3.3 years ago by Jennifer Hillman Jackson25k • written 3.4 years ago by raj_26292020
gravatar for Jennifer Hillman Jackson
3.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:


It sounds as if the tool installation is problematic. Double check that you are using the latest version of the tool wrapper (2015-03-16) and Galaxy release. And be certain to install with managed dependencies (this is the default). If the tool install is still problematic, you can contact the tool authors through the Tool Shed when logged in (menu -> Repository Actions).

Best, Jen, Galaxy team

ADD COMMENTlink written 3.3 years ago by Jennifer Hillman Jackson25k
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