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• Problem BWA in Galaxy Tool
  Hello everyone I'm a new guy in galaxy tool I try to run BWA tool that I install it from  Galax...
• Bowtie2/BWA-MEM remain waiting to run for several days in Main server. Is it only in my account?
  Hi all, I've been trying to run Bowtie2 and BWA-MEM with several datasets and in different histo...
• Installing new tools
  When installing tools from the toolshed, does it also install the binaries for the tool? For inst...
• Galaxy October 5, 2012 Distribution & News Brief
  *Galaxy October 5, 2012 Distribution & News Brief* /http://wiki.g2.bx.psu.edu/DevNewsBriefs/2...
• Bwa Failing To Index?
  I just installed a new instance of Galaxy and bwa_wrappers from the main toolshed. I then upload...
• Most recent tools in Main toolshed?
  Is there a way to monitor if there is new tools in specific category in the toolshed submitted? O...
• Error status when I install bwa tool shed
  I followed the steps here https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/ ...
• Can't run files successfully using BWA-MEM
  Hi I am currently working on a course project. Using the main galaxy server, I am having issues ...
• Help local tool wrapper not seeing BWA getting error: sh: bwa: command not found
  Help I have created a tool with a local wrapper that uses BWA when I specify the absolute path t...
• Are all the starting BED coordinates generated by BWA matching the first base of the reads ?
  I am currently using "Map with BWA for illumina" (in galaxy main server) with default settings to...
• Error with BWA in local Galaxy
  Hello, I´m new using Galaxy and would really appreciate some help. I´m trying to run BWA in my lo...
• Main Galaxy Server Is Down?
  I have the same problem with the BWA mapping tool (jobs waiting for run since Friday), but other ...
• What is the difference between the tools "BWA" and and "Map with BWA for illumina" - tolerated mismatches at sequence end
  Hi, What is the difference between the tools "BWA" and and "Map with BWA for illumina"  ? I rea...
• Data manager failure to create index(s) in 17.05 local
  Been having a devil of a time getting Galaxy going on a brand new 17_05 installation. I have use...
• Need help with "Reorder SAM/BAM" tool
  HI am trying to reorder a SAM file output from BWA. So I can use it in GATK.   However I get the...
• Bwa Indexing Not Automatic?
  I installed a new copy of galaxy today and then added the bwa_wrappers tool. After I upload my r...
• problems with bwa installation
  Dear all, I have problems to install bwa, when i try to install bwa from tool shed and the insta...