Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list shows only the genomes from C. elegans and Brachypodium, No genome of any version for homo sapiens ?? Is there no way to include human genomes in SnpEff on the main page?
These are the only two genomes currently supported on the public Main Galaxy instance. I do not believe that there are active plans to add more genomes, but this could change.
For now, if you wish to use the tool with alternate genomes, then a local or cloud Galaxy is the best path.
Thanks, Jen, Galaxy team