Question: SnpEff supports only genomes of two species?
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gravatar for BC357
3.6 years ago by
BC35770
United States
BC35770 wrote:

Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list shows only the genomes from C. elegans and Brachypodium, No genome of any version for homo sapiens ?? Is there no way to include human genomes in SnpEff on the main page?

snpeff • 821 views
ADD COMMENTlink modified 3.6 years ago by Jennifer Hillman Jackson25k • written 3.6 years ago by BC35770
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gravatar for Jennifer Hillman Jackson
3.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

These are the only two genomes currently supported on the public Main Galaxy instance. I do not believe that there are active plans to add more genomes, but this could change. 

For now, if you wish to use the tool with alternate genomes, then a local or cloud Galaxy is the best path. 
http://wiki.galaxyproject.org/Support#About_Galaxy

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3.6 years ago by Jennifer Hillman Jackson25k
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