Question: creating applications for python3.4
1
gravatar for jasperkoehorst
3.3 years ago by
Netherlands
jasperkoehorst10 wrote:

I am trying to deploy my applications that I currently have in development towards the galaxy tool shed.

They however required python3.4 and biopython for python3.4. How do I tell galaxy that? I found some code within the tool shed but I am not sure if this will then be 2.7 or 3.4...

<?xml version="1.0"?>
<tool_dependency>
    <package name="biopython" version="1.61">
        <repository changeset_revision="ae9dda584395" name="package_biopython_1_61" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>

 

tool config python3.4 • 859 views
ADD COMMENTlink modified 3.3 years ago by Martin Čech ♦♦ 4.7k • written 3.3 years ago by jasperkoehorst10
0
gravatar for Martin Čech
3.3 years ago by
Martin Čech ♦♦ 4.7k
United States
Martin Čech ♦♦ 4.7k wrote:

Hello,

there is package by the IUC for python3.4 - https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_3_4 and by Peter Cock for various biopython versions: https://github.com/biopython/galaxy_packages

If you have more specific questions about biopython I suggest you ask in the repo linked above.

All of these are available at Galaxy Tool Shed. If you make your tool dependent on these packages (through the tool_dependencies.xml) you can count on having them available.

Let us know if you need more help.

Martin

ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by Martin Čech ♦♦ 4.7k
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