Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Need help with "Tabular-to-FASTA" tool
1
gravatar for hwexler
3.8 years ago by
hwexler • 20
United States
hwexler • 20 wrote:

I am trying to use this tool to convert genes that are in excel to fasta format.  I saved as tab delimited text and uploaded to galaxy, but I can't seem to choose my file when trying to use the tool.

 

Any help would be most welcome.

 

Tool name: Tabular-to-FASTA
Tool version: 1.1.0
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.0
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/tabular_to_fasta
tabular-to-fasta • 1.1k views
ADD COMMENT • link •
modified 3.8 years ago by Martin Čech ♦♦ 4.9k • written 3.8 years ago by hwexler • 20
2
gravatar for Martin Čech
3.8 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

In order to be shown in the dataset selection dropdown within the tool form the dataset needs to have the right datatype specified. You can try setting the datatype to 'tabular' manually if you click on the dataset's 'pencil' icon in the history and select the Datatype tab.
ADD COMMENT • link written 3.8 years ago by Martin Čech ♦♦ 4.9k
1

Hi Thanks Martin, but it won't let me manually change it (it calls it roadmap) once I upload because it says it is in use.

ADD REPLY • link written 3.8 years ago by hwexler • 20
1

In that case it seems the auto-detect job is still running. Are you using https://usegalaxy.org server? Try uploading the dataset again and setting the tabular type right when uploading.

ADD REPLY • link written 3.8 years ago by Martin Čech ♦♦ 4.9k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 173 users visited in the last hour