I have a local installation of Galaxy on our server. The server has a module system with loads of bioinformatics software and versions installed. Without galaxy we can load a module and execute the program so:
$ module load cutadapt/1.5.0
$ cutadapt a.fastq etc...
Can I somehow use these available tools, rather than install them through tool shed? It seems that installing through tool shed copies it's own binaries which it uses.