I am trying to see BAM files on IGV - but since the reference file has names that look like this: ca21chr1...
and the BAM file has headings that look like this: contig222, contig34 etc, it can't open the file to view the
I opened the file in BAMseek - and it is clear that the for each read, the right location on the reference was
found, but this is not read well in IGV.
Can anyone tell me how to change the headings to match the appropriate reference location?