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13
votes
1
answer
5.3k
views
11 follow
1
answer
1
vote
2
answers
3.1k
views
5 follow
2
answers
venv/bin/activate: No such file or directory
local galaxy galaxy venv/bin/activate install written 2.2 years ago by wippermm10 • updated 8 months ago by n.goue40
1
vote
2
answers
3.0k
views
2
answers
Reference Genomes At Local Instance Of Galaxy
galaxy written 6.2 years ago by Yang, Yanming10 • updated 9 months ago by laurent.fournier10
4
votes
3
answers
1.9k
views
3
answers
fastq to bam
bam written 22 months ago by aaltaytas0 • updated 4 months ago by fp2150
1
vote
2
answers
1.7k
views
2
answers
3
votes
0
answers
1.7k
views
5 follow
0
answers
9
votes
6
answers
1.5k
views
7 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 11 months ago by johanvn10 • updated 11 months ago by franklin_moreno0
3
votes
5
answers
1.5k
views
5
answers
1
vote
1
answer
1.5k
views
1
answer
Tophat vs HISAT
cufflinks tophat rna-seq written 12 months ago by Beatriz Ramos10 • updated 11 months ago by Jennifer Hillman Jackson25k
3
votes
2
answers
1.4k
views
2
answers
Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 19 months ago by deane30 • updated 4 months ago by yusheng_tan0
5
votes
8
answers
1.4k
views
6 follow
8
answers
DiffBind on Galaxy
en_us.utf-8 error written 2.2 years ago by j.m.fustin10 • updated 9 weeks ago by Jennifer Hillman Jackson25k
2
votes
5
answers
1.4k
views
5
answers
1
vote
2
answers
1.4k
views
2
answers
1
vote
2
answers
1.3k
views
2
answers
cummeRbund SQLite database error from Galaxy main CuffDiff tool
R galaxy cufflinks rna-seq written 2.7 years ago by nevil20 • updated 4 weeks ago by adoorprabha0
0
votes
2
answers
1.3k
views
2
answers
How to use cuffmerge and cuffdiff
rna-seq written 13 months ago by lrm_19850 • updated 6 months ago by h.jagatia0
3
votes
2
answers
1.3k
views
6 follow
2
answers
Phenotype data for Ballgown tool
ballgown galaxy rna-seq written 12 months ago by tamrin.chowdhury40 • updated 4 months ago by rpink10
5
votes
3
answers
1.2k
views
3
answers
salmon gene quant to DESeq2
galaxy rna-seq written 10 months ago by matthew.johnson30 • updated 5 weeks ago by jevanveen10
3
votes
6
answers
1.2k
views
5 follow
6
answers
How to create GFF file for HT seq
bam rna-seq written 21 months ago by shraddha.adamane10 • updated 4 months ago by Joey Zou0
7
votes
2
answers
1.1k
views
2
answers
6
votes
3
answers
1.1k
views
7 follow
3
answers
GATK (deprecated tools)
gatk galaxy written 14 months ago by apozhitkov60 • updated 13 days ago by gintotomticket0
0
votes
2
answers
1.1k
views
2
answers
Microrna Seq Data Workflow Analysis
galaxy written 7.9 years ago by Ana Sevilla20 • updated 11 months ago by valasek0
20
votes
10
answers
1.1k
views
14 follow
10
answers
Workflow cannot run - Admin: older issue, see 25048 for current
workflow written 16 months ago by wuw11180 • updated 10 weeks ago by a.januszewski10
1
vote
2
answers
1.0k
views
2
answers
Failure to download data from EBI-SRA to a local Galaxy instance
ebi sra download written 3.1 years ago by yu.1.wang20 • updated 6 months ago by mohancm890
2
votes
1
answer
1.0k
views
1
answer
"Unable to finish job" but no errors, data seems to be there?
tophat written 2.7 years ago by Brian Griffiths20 • updated 4 months ago by yusheng_tan0
2
votes
2
answers
1.0k
views
2
answers
TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 21 months ago by avoltz30 • updated 6 months ago by Wanderer10
1
vote
1
answer
999
views
6 follow
1
answer
Naming output file according to input file
galaxy tool dev written 2.3 years ago by Rob50 • updated 8 days ago by Thon deBoer10
1
vote
2
answers
998
views
2
answers
0
votes
1
answer
985
views
1
answer
how to convert gene.id to gene name
chip-seq written 11 months ago by mayurdoke10 • updated 11 months ago by Jennifer Hillman Jackson25k
4
votes
1
answer
982
views
1
answer
Problems with connection to FTP server (SSL/TLS required)
error message ftp upload written 5 months ago by Mesohexaploid 10 • updated 5 months ago by utkarsh.kapoor50
1
vote
1
answer
919
views
1
answer
significant genes not shown in the scatter and volcano plots
rna-seq written 2.1 years ago by brarp061910 • updated 11 months ago by akilabioinfo0
1
vote
2
answers
899
views
2
answers
Problem With Downloading
galaxy written 4.8 years ago by GANDRILLON OLIVIER70 • updated 11 months ago by sameerdilipkhot20
1
vote
1
answer
894
views
1
answer
2
votes
2
answers
882
views
2
answers
type of file for reference genome
tophat written 4.0 years ago by namratakumari10 • updated 12 months ago by westcott10
2
votes
2
answers
855
views
2
answers
8
votes
5
answers
846
views
5
answers
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