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13
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1
answer
5.8k
views
11 follow
1
answer
1
vote
2
answers
4.2k
views
5 follow
2
answers
venv/bin/activate: No such file or directory
local galaxy galaxy venv/bin/activate install written 2.4 years ago by wippermm10 • updated 11 months ago by n.goue50
1
vote
2
answers
3.1k
views
2
answers
Reference Genomes At Local Instance Of Galaxy
galaxy written 6.4 years ago by Yang, Yanming10 • updated 11 months ago by laurent.fournier10
4
votes
3
answers
2.2k
views
3
answers
fastq to bam
bam written 2.1 years ago by aaltaytas0 • updated 7 months ago by fp2150
3
votes
0
answers
1.9k
views
5 follow
0
answers
15
votes
6
answers
1.8k
views
8 follow
6
answers
How can I get the version of a running instance of galaxy ?
version written 4.3 years ago by plindenbaum90 • updated 10 days ago by arunaravind2110
3
votes
2
answers
1.8k
views
6 follow
2
answers
Phenotype data for Ballgown tool
ballgown galaxy rna-seq written 15 months ago by tamrin.chowdhury40 • updated 7 months ago by rpink10
4
votes
1
answer
1.8k
views
1
answer
Problems with connection to FTP server (SSL/TLS required)
error message ftp upload written 8 months ago by Mesohexaploid 10 • updated 8 months ago by utkarsh.kapoor50
0
votes
2
answers
1.6k
views
2
answers
How to use cuffmerge and cuffdiff
rna-seq written 16 months ago by lrm_19850 • updated 9 months ago by h.jagatia0
5
votes
3
answers
1.6k
views
3
answers
salmon gene quant to DESeq2
galaxy rna-seq written 13 months ago by matthew.johnson30 • updated 4 months ago by jevanveen10
3
votes
2
answers
1.6k
views
2
answers
Local Tophat Error "OSError: [Errno 2] No such file or directory"
samtools local admin tophat path written 22 months ago by deane30 • updated 6 months ago by yusheng_tan0
5
votes
8
answers
1.6k
views
6 follow
8
answers
DiffBind on Galaxy
en_us.utf-8 error written 2.5 years ago by j.m.fustin10 • updated 5 months ago by Jennifer Hillman Jackson25k
1
vote
1
answer
1.6k
views
1
answer
2
votes
5
answers
1.5k
views
5
answers
3
votes
6
answers
1.5k
views
5 follow
6
answers
How to create GFF file for HT seq
bam rna-seq written 2.0 years ago by shraddha.adamane10 • updated 7 months ago by Joey Zou0
1
vote
2
answers
1.4k
views
2
answers
cummeRbund SQLite database error from Galaxy main CuffDiff tool
R galaxy cufflinks rna-seq written 2.9 years ago by nevil20 • updated 3 months ago by adoorprabha0
7
votes
2
answers
1.4k
views
2
answers
0
votes
3
answers
1.4k
views
3
answers
0
votes
5
answers
1.3k
views
5
answers
Galaxy Install Issues - pip version
galaxy written 2.1 years ago by njoebott30 • updated 10 weeks ago by guillaume.lhostis0
20
votes
10
answers
1.3k
views
14 follow
10
answers
Workflow cannot run - Admin: older issue, see 25048 for current
workflow written 19 months ago by wuw11180 • updated 5 months ago by a.januszewski10
4
votes
2
answers
1.3k
views
5 follow
2
answers
pileup to vcf
galaxy mpileup vcf pileup written 3.6 years ago by charles.wray20 • updated 11 weeks ago by Jennifer Hillman Jackson25k
7
votes
2
answers
1.3k
views
2
answers
Concatenate fastq files in galaxy
text-manipulation datatype galaxy concatenate written 2.6 years ago by biorashid0 • updated 9 weeks ago by Jennifer Hillman Jackson25k
7
votes
2
answers
1.3k
views
9 follow
2
answers
Galaxy failed to unzip gz files after uploading
chip-seq gz galaxy unzip written 18 months ago by jamwest10120 • updated 7 weeks ago by maisarahabsamad0
6
votes
3
answers
1.2k
views
7 follow
3
answers
GATK (deprecated tools)
gatk galaxy written 17 months ago by apozhitkov60 • updated 3 months ago by gintotomticket0
1
vote
1
answer
1.2k
views
6 follow
1
answer
Naming output file according to input file
galaxy tool dev written 2.5 years ago by Rob50 • updated 3 months ago by Thon deBoer20
2
votes
2
answers
1.1k
views
2
answers
1
vote
2
answers
1.1k
views
2
answers
Failure to download data from EBI-SRA to a local Galaxy instance
ebi sra download written 3.3 years ago by yu.1.wang20 • updated 9 months ago by mohancm890
2
votes
1
answer
1.1k
views
1
answer
"Unable to finish job" but no errors, data seems to be there?
tophat written 2.9 years ago by Brian Griffiths20 • updated 6 months ago by yusheng_tan0
2
votes
2
answers
1.1k
views
2
answers
TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 2.0 years ago by avoltz30 • updated 9 months ago by Wanderer10
0
votes
1
answer
1.1k
views
1
answer
1
vote
1
answer
1.1k
views
1
answer
5
votes
1
answer
1.0k
views
5 follow
1
answer
FTP Connection Refused
galaxy ftp written 11 months ago by renae.geier40 • updated 11 months ago by Nate Coraor3.2k
2
votes
1
answer
1.0k
views
1
answer
DE analysis of miRNA after mapping with miRDeep2 quantifier
mirna differential expression written 10 months ago by starr3420 • updated 10 months ago by dilmurat.yusuf10
2
votes
3
answers
989
views
3
answers
ANNOVAR not working
software error written 2.6 years ago by raitis20 • updated 10 weeks ago by ximenabonilla0
0
votes
1
answer
974
views
1
answer
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