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0
votes
4
answers
3.2k
views
4
answers
1
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2
answers
2.7k
views
2
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Reference Genomes At Local Instance Of Galaxy
galaxy written 5.7 years ago by Yang, Yanming10 • updated 3 months ago by laurent.fournier10
2
votes
2
answers
2.7k
views
2
answers
Cuffdiff Error - sort order of reads in BAMs must be the same
cuffdiff rna-seq written 2.9 years ago by francis.gandhi20 • updated 9 months ago by takshan10
1
vote
10
answers
2.3k
views
10
answers
Adding a reference genome to local Galaxy
local galaxy reference genome written 2.1 years ago by ekob2010 • updated 9 months ago by qaedi.650
7
votes
3
answers
1.9k
views
3
answers
getting number of SNPs, insertion/deletion from VCF with VCFfilter
vcf galaxy snp indels vcffilter written 20 months ago by lorenasfe30 • updated 11 months ago by chen.randy110
1
vote
2
answers
1.9k
views
5 follow
2
answers
venv/bin/activate: No such file or directory
local galaxy galaxy venv/bin/activate install written 20 months ago by wippermm10 • updated 3 months ago by n.goue30
5
votes
4
answers
1.8k
views
8 follow
4
answers
1
vote
2
answers
1.6k
views
2
answers
Inconsistency Between Cufflinks And Cuffdiff. This Is Killing Me.
cufflinks rna-seq written 5.5 years ago by Jia Meng10 • updated 6 months ago by vm.higareda0
2
votes
11
answers
1.5k
views
11
answers
0
votes
2
answers
1.4k
views
2
answers
Stitch Maf Blocks
galaxy written 4.2 years ago by Jennifer Di Tommaso20 • updated 9 months ago by biofilia0
3
votes
2
answers
1.3k
views
2
answers
Mapping quality plot of BAM file
quality mapping plot written 11 months ago by vebaev130 • updated 11 months ago by y.hoogstrate450
3
votes
5
answers
1.2k
views
5
answers
0
votes
2
answers
1.1k
views
2
answers
Add a new reference genome
tophat rna-seq written 3.1 years ago by small0 • updated 11 months ago by jiangdan0
1
vote
2
answers
1.1k
views
2
answers
3
votes
7
answers
979
views
5 follow
7
answers
DiffBind on Galaxy
en_us.utf-8 error written 21 months ago by j.m.fustin10 • updated 8 months ago by zachary.gaber80
2
votes
1
answer
965
views
1
answer
Forum: The Biostar Handbook is out. Perhaps the Galaxy Handbook should be next?
galaxy handbook forum written 12 months ago by Istvan Albert260 • updated 4 months ago by anavisharma345770
9
votes
6
answers
963
views
7 follow
6
answers
TopHat tool missing?
usegalaxy.org hisat tophat rna-seq written 6 months ago by johanvn10 • updated 6 months ago by franklin_moreno0
3
votes
2
answers
955
views
2
answers
gff to gtf conversion
rna-seq gtf tophat gff written 13 months ago by computationalvarun20 • updated 7 months ago by Guy Reeves1.0k
0
votes
2
answers
930
views
2
answers
Microrna Seq Data Workflow Analysis
galaxy written 7.4 years ago by Ana Sevilla20 • updated 5 months ago by valasek0
1
vote
2
answers
871
views
2
answers
Failure to download data from EBI-SRA to a local Galaxy instance
ebi sra download written 2.6 years ago by yu.1.wang20 • updated 27 days ago by mohancm890
5
votes
1
answer
856
views
1
answer
0
votes
0
answers
839
views
0
answers
Trimmomatic and adapters
trimmomatic galaxy rna-seq written 10 months ago by binibe70
4
votes
2
answers
819
views
2
answers
Fail to upload data to local Galaxy 16.07
set_metadata python lib not found upload written 12 months ago by david.a.morais110 • updated 8 months ago by heidi.hough0
0
votes
1
answer
812
views
1
answer
Interpreting Stats output of SAM tools
chip-seq samtools bam written 9 months ago by hpremathilake20 • updated 9 months ago by Jennifer Hillman Jackson23k
1
vote
2
answers
796
views
2
answers
Problem With Downloading
galaxy written 4.4 years ago by GANDRILLON OLIVIER70 • updated 5 months ago by sameerdilipkhot20
19
votes
9
answers
795
views
13 follow
9
answers
Workflow cannot run - Admin: older issue, see 25048 for current
workflow written 11 months ago by wuw11180 • updated 10 weeks ago by Jennifer Hillman Jackson23k
1
vote
2
answers
789
views
2
answers
Filtering Variants using Snpsift filter and SnpEff
galaxy snp written 10 months ago by braveen.joseph20 • updated 10 months ago by Guy Reeves1.0k
2
votes
2
answers
785
views
2
answers
TopHat - set metadata manually or retry auto-detection
tophat rna-seq written 16 months ago by avoltz30 • updated 26 days ago by Wanderer10
1
vote
0
answers
778
views
0
answers
2
votes
2
answers
756
views
2
answers
type of file for reference genome
tophat written 3.6 years ago by namratakumari10 • updated 6 months ago by westcott10
0
votes
4
answers
740
views
7 follow
4
answers
DIAMOND on Galaxy
galaxy software error written 20 months ago by cryomics0 • updated 9 months ago by Bjoern Gruening4.8k
0
votes
1
answer
725
views
1
answer
Inconsistent Cuffdiff Output-Corrected Question
cufflinks rna-seq written 5.3 years ago by i b330 • updated 6 months ago by vm.higareda0
2
votes
2
answers
719
views
2
answers
0
votes
0
answers
717
views
0
answers
0
votes
1
answer
716
views
1
answer
Cuffdiff Test Statistic Explanation
cuffdiff rna-seq written 9 months ago by kjh3180 • updated 9 months ago by Jennifer Hillman Jackson23k
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